The output from pdist is a symmetric dissimilarity matrix, stored as a vector containing only the (23*22/2) elements in its upper triangle. See answers from experts and users with examples, alternatives and tips for MATLAB and Python. (For example, -r300 sets the output resolution to 300 dots per inch. If you do not use command line there are github programs for Windows and Mac, see github web page. sqrt(((u-v)**2). However dvbs2ldpc function only applies for NORMAL one. If I have two points in 3d, A = [1579. Is there a way of obtaining percentiles other than the prctile function? //AM 0 Comments. 7 249] these are (x, y, z) coordinates in mm, What is the easiest way to compute the distance (mm) between these two points in matlab, Thanks. How to compute Euclidean Distance For Similarity between 2. I used Python to find the points in a . 01634 Hz–0. tutorial, we assume that you know the basics of Matlab (covered in Tutorial 1) and the basics of statistics. m is interfering with use of the pdist2 from the Statistics toolbox. Now, to Minkowski's distance, I want to add this part. Therefore, D1 (1) and D1 (2), the pairwise distances (2,1) and (3,1), are NaN values. Signal-to-Noise Ratio (SNR). Any content placed in that folder will sync with MATLAB Drive. For more information, see Run MATLAB Functions in Thread-Based Environment. It shows a path (C:\Program Files\MATLAB. x[x>3] instead of np. More precisely, the distance is given by. Syntax. Try something like E = pdist2 (X,Y-mean (X),'mahalanobis',S); to see if that gives you the same results as mahal. Clusters indicate regions of images and lidar point clouds in segmentation algorithms. I used Python to find the points in a . C = A. 396 views. I'd like to compute the average distance between each observation in my matrix, but pdist() fails here, because app. Chances are you don't need that all in memory at the same time. y = squareform (Z) squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. dim = dist ('size',S,R,FP) takes the layer dimension S, input dimension R, and function. ^2 ). I am using now (more or less) #terms~=10000 and #docs~=10000. pdist returns a condensed distance matrix. Version History. Answers (1) This issue could be due to RAM limitations. Z (2,3) ans = 0. 2954 1. Learn more about pdist, matrix, matrix manipulation, distances MATLAB, Statistics and Machine Learning Toolbox. matlab code for the mahalanobis distance function helped me in my Pattern recognition''Pairwise distance between pairs of observations MATLAB pdist May 1st, 2018 - This MATLAB function returns the Euclidean distance between pairs of observations in X For code generation pdist uses parfor MATLAB ® Coder? treatsA Nearest neighbor search locates the k -nearest neighbors or all neighbors within a specified distance to query data points, based on the specified distance metric. D = pdist (X) 1. distfun must return an m2-by-1 vector of distances d2, whose kth element is the distance between XI and XJ(k,:) You can use one of the following methods for your utility: norm (): distance between two points as the norm of the difference between the vector elements. dist(p, q) 参数说明： p -- 必需，指定第一个点。I am struggling a bit here, and hope somebody could help. pix_cor= [2 1;2 2; 2 3]; x = pix_cor (:,1); y = pix_cor (:,2); Now, what does MATLAB do if you form differences like these? x - x'. What I want is to now create an mxm matrix B where B(i,j) = norm(vi -vj). c = cophenet(Z,Y) Description. MATLAB Calculate L2 Euclidean distance kawahara ca. Classification. K means Clustering in Matlab Matlab Geeks. Nevertheless, data that is to be analyzed, must get from RAM to VRAM and that takes some time. I am getting the following error: Theme. The problem lie down here is not how to compare feature vector, it is how to represent your image by single vector. matlab; large-data; distance-functions; euclidean; unicoder. Y = pdist(X) computes the Euclidean distance between pairs of objects in m-by-n matrix X, which is treated as m vectors of size n. cophenet. I have a point-cloud, for which i want to calculate the distance between all individual points in Matlab (preferably without duplicates). |x intersect y| indicates the number of common items which. Upgrade is not an option. My distance function is in the form: Distance = pdist (matrix,@mydistance); so given a. . pdist. Basis Function Networks. 2356. Development install. The Matlab pdist function allows you to compute a custom pairwise distance metric if you supply a function handle to a function you code that computes the distance. Forum; Pricing; Dash; MATLAB®. Learn more about distance, euclidean, pdist, coordinates, optimisation MATLAB Hi all, Many of the codes I am currently using depend on a simple calculation: the distance between a single point and a set of other points. MATLAB pdist WebA distance metric is a function that defines a distance between two observations. Parallel Computing Toolbox™ provides functions for creating and using parallel pools, allowing you to use additional hardware resources through threads and processes to enhance your application's performance and reduce time to results. I have a 399 cities array with LON LAT coordinates (first column for the Longitudes), like the picture below. You can specify D as either a full n-by-n matrix, or in upper triangle form such as is output by pdist. So I looked into writing a fast implementation for R. Copy. y = cos (2*pi*18* (1:399)/400); dtw (x,y);Table 2. Description. It is widely used in science and engineering fields. The Canberra distance between two points u and v is. Pass Z to the squareform function to reproduce the output of the pdist function. pd = makedist (distname,Name,Value) creates a probability distribution object with one or more distribution parameter values specified by name-value pair arguments. – Nicky Mattsson. Then execute 'memory' command in the Command Window and send the output. Idx has the same number of rows as Y. See Also. How to find euclidean distance MATLAB Answers MATLAB. % Learning toolbox. The most efficient pairwise distance computation. If the sizes of A and B are compatible, then the two arrays implicitly expand to match each other. Minkowski's distance equation can be found here. For example, you can find the distance between observations 2 and 3. dist() 方法语法如下： math. You can customize the distance metric, use a cache of. However, notice what the root folder is - MATLAB Drive. Y = pdist (X, 'canberra') Computes the Canberra distance between the points. k = 2 B_kidx = knnsearch(B, A, 'K', k) then B_kidx will be the first two columns of B_idx, i. Pass Z to the squareform function to reproduce the output of the pdist function. EDIT: Context. LatLon distance. TagsThe Mahalanobis distance is a measure between a sample point and a distribution. Therefore it is much faster than the built-in function pdist. 9448. [xNorth,yEast,zDown] = geodetic2ned (lat,lon,h,lat0,lon0,h0,spheroid) transforms the geodetic coordinates specified by lat , lon, and h to the local north-east-down (NED) Cartesian coordinates specified by xNorth, yEast, and zDown. For example |A| number of items that is not zero is 2, for |B| and |C| it is 1, and for |D| it is 2. e. Calculating Euclidean distance of pairs of 3D points in matlab Is it. y = squareform (Z) How does condensed distance matrix work? (pdist) scipy. 0. The angle between two vectors Deliverables: - Your code for 'eucdist' contained in 'eucdist. pdist函数 D = pidst(X)主要计算X的行的距离，例如输入X为m n的矩阵，输出D为m (m-1)/2的向量 pdist 认为输入矩阵中，每一行是一个实例。MATLAB: we have data that give x y coordinates of occurences. Specify 'NSMethod','kdtree' to create a KDTreeSearcher object. Define a custom distance function naneucdist that ignores coordinates with NaN values and returns the Euclidean distance. I thought ij meant i*j. You use the sdo. distance import pdist dm = pdist(X, lambda u, v: np. D = pdist (Tree) returns D , a vector containing the patristic distances between every possible pair of leaf nodes of Tree, a phylogenetic tree object. for each point in A the indices of the nearest two points in B. Add the %#codegen compiler directive (or pragma) to the entry. However, a proper distance measure needs to have a few properties, i. Goncalves. bwdist() does not really compute the distance between two pixels, like you asked initially. This method for the hierarchical clustering has been previously described in Hutchison and Everling (2014) and Schaeffer et al. Z = linkage (meas, 'average', 'chebychev' ); Find a maximum of three clusters in the data. a2 b2 c2. Now, to Minkowski's distance, I want to add this part. Y = pdist(X,'euclidean') Create an agglomerative hierarchical cluster tree from Y by using linkage with the 'single' method for computing the shortest distance between clusters. If you realize that. How do we calculateI can not use matlab function pdist pdist2 I need standard euclidean distance between two vectors. How do we calculate Euclidean Distance Matrix in Matlab. ParameterSpace to specify the probability distributions for model parameters that define a parameter space for sensitivity analysis. 9448. Goncalves. A distance function specified using @: D = pdist (X,@distfun) A distance function must be of form d2 = distfun (XI,XJ) taking as arguments a 1-by-n vector XI, corresponding to a single row of X, and an m2-by-n matrix XJ, corresponding to multiple rows of X. 4 51. T = cluster (Z,'Cutoff',C) defines clusters from an agglomerative hierarchical cluster tree Z . 1. Puede especificar DistParameter solo cuando Distance sea 'seuclidean', 'minkowski' o 'mahalanobis'. Copy. Thread-Based Environment Run code in the background using MATLAB® backgroundPool or accelerate code with Parallel Computing Toolbox™ ThreadPool. D = pdist(X) D = pdist(X) 返回 观测点对之间的欧氏距离。 X是m*n矩阵，矩阵中每一行作为observation，每一列作为variables（即计算矩阵中每一行之间的距离），D得到的是一个长度为 m*(m-1)/2. rng ( 'default') % For reproducibility X = rand (3,2); Compute the Euclidean distance. ), however at the end, it shows an important message. 8 or greater), indicating that the clusters are well separated. This #terms resulted after stopwords removal and stemming. % Requires the Statistics and Machine Learning Toolbox because of the pdist() and squareform() functions. 层次聚类是基于距离的聚类方法,MATLAB中通过pdist、linkage、dendrogram、cluster等函数 来完成。层次聚类的. Implement Matlab functions for comparing two vectors in terms of: a. Copy. For example, treat 4 as a missing double value in addition to NaN. Learn more about for loop, matrix array MATLAB. 8322 268. Follow. El código generado de pdist usa parfor (MATLAB Coder). There are also two extra functions 'cdist', and 'pdist' to compute pairwise distances between all trajectories in a list or two lists. Pass Z to the squareform function to reproduce the output of the pdist function. To get the distance, you may use the MATLAB function pdist: D = pdist(X) This computes the Euclidean distance between pairs of objects in m-by-n data matrix X. Supervised and semi-supervised learning algorithms for binary and multiclass problems. 15HztoimproveidenticationofMATLAB GPU Computing Support for NVIDIA CUDA Enabled GPUs Generate CUDA code directly from MATLAB for deployment to data centers, clouds, and embedded devices using GPU Coder™. Go to MATLAB > Preferences > Workspace and ensure the Maximum array size limit is set to 100%. For example, you can find the distance between observations 2 and 3. Try something like E = pdist2 (X,Y-mean (X),'mahalanobis',S); to see if that gives you the same results as mahal. Ultimately, the. View More. For example, you can find the distance between observations 2 and 3. Description. This function fully supports thread-based environments. Calculating euclidean distance MATLAB Answers Yesterday ur code did not work but now its working may be i have not used clear D i have extracted features. Nov 8, 2013 at 9:26. Pairwise distance between pairs of observations MATLAB pdist. Classical Multidimensional Scaling. I simply call the command pdist2(M,N). How to compute projections of 3D meshes in matlab. 可以这样理解 D 的生成：首先生成一个 X 的距离方阵，由于该方阵是对称的，令对角线上的元素为0，所以取此方阵的下三角元素. The number of observation -for each variable- was. 1 Why a MATLAB function pdist() is not working? 0 Minkowski distance and pdist. In my previous runnings of the same code it was. For the future, try typing edit pdist2 (or whatever other function) in Matlab, in most cases, you will see the Matlab function, which you can then convert to python. Distance – Hamming Vs. Different behaviour for pdist and pdist2. Not exactly. For example, if it was correlation I might make the colour bar range from -1 to 1 but then I would also use a different normalization. MATLAB Calculate L2 Euclidean distance kawahara ca. clear A = rand (132,6); % input matrix diss_mat = pdist (A,'@kullback_leibler_divergence'); % calculate the. m. Similarity measurement in machine learning, Comparison of method summaryai lin 1 weeks ago (01-10) 876 ℃ 0 Reviews Cangwu. Repeat the computation. 转载自CSDN——再次写给我们这些浮躁的程序员; matlab - 3 自由度的机械臂Documentation, examples, videos, and other support resources for MathWorks products including MATLAB and Simulink. imputedData1 = knnimpute (yeastvalues); Check if there any NaN left after imputing data. 5 4. Learn more about custom distance function, pdist, pdist2, @distfun, divergence, kl divergence1. . Mia on 11 May 2020 Commented: Mia on 11 May 2020 Accepted Answer: Image Analyst Hi, So if I have one 102x2 matrix of x,y coordinates, and another 102x2 matrix of x,y. Newbie Euclidean distance of a matrix MATLAB Answers. Improve this answer. calculate_distance. load arrhythmia isLabels = unique (Y); nLabels = numel (isLabels) nLabels = 13. Now, it is confirmed that I do not have a license. . How to find euclidean distance MATLAB Answers MATLAB. {"payload":{"allShortcutsEnabled":false,"fileTree":{"":{"items":[{"name":"+local","path":"+local","contentType":"directory"},{"name":"+lp","path":"+lp","contentType. ) Y = pdist(X,'minkowski',p) Description . list = makedist returns a cell. Find more on Workspace Variables and MAT-Files in Help Center and File Exchange. Tomas on 5 Feb 2014. 거리 인수가 'fasteuclidean', 'fastsquaredeuclidean' 또는 'fastseuclidean'이고 cache 값이 너무 크거나 "maximal"인 경우, pdist 함수는 사용 가능한 메모리를 초과하는 그람 행렬을 할당하려고 시도할 수 있습니다. dist=pdist ( [x (i);y (j)],'minkowski'); Up till here, the above command will do the equation shown in the link. . It also produces an image where the pixel values are the distances of that pixel to the nearest foreground pixel. Utilice kmeans para crear grupos en MATLAB® y utilice pdist2 en el código generado para asignar nuevos datos a grupos existentes. You can use the standardizeMissing function to convert those values to the standard missing value for that data type. 0 matlab Pdist2 with mahalanobis metric. The distances are returned in a one-dimensional array with length 5*(5-1)/2 = 10. D = pdist2 (X,Y,Distance,DistParameter,'Largest',K) computes the distance using the metric specified by Distance and DistParameter and returns the K largest pairwise distances in descending order. ) Y = pdist(X,'minkowski',p) Description . A distance function specified using @: D = pdist (X,@distfun) A distance function must be of form d2 = distfun (XI,XJ) taking as arguments a 1-by-n vector XI, corresponding to a single row of X, and an m2-by-n matrix XJ, corresponding to multiple rows of X. The behavior of this function is very similar to the MATLAB linkage function. If you do not use command line there are github programs for Windows and Mac, see github web page. MATLAB Programming Techniques for Efficiency and Performance. pdist does not perform magic; it is only fast because its built-in distance functions are implemented efficiently. Backprojection from projection matrix using MATLAB. The function you pass to pdist must take . distance. matlab module contains a number of functions that emulate some of the functionality of MATLAB. In the past pdist has always given an output such that dv [i,j] should have had an output of the euclidean distance between the ith row vector of the first matrix and the jth row vector of the second matrix. 欧氏距离： 也可以用表示成向量运算的形式： (4)Matlab计算欧氏距离 Matlab计算距离主要使用pdist函数。若X是一个M×N的矩阵，则pdist(X)将X矩阵M行的每一. e. for each point in A the indices of the nearest two points in B. Feb 25, 2018 at 9:36. (e. +1 You might also mention that you can index numpy arrays with boolean arrays, the same as you can in matlab. For example if matrix A was 102x3 and Matrix B was 3x15, is there a MATLAB function that can do this calculation for me or do I need to use nested for loops? 0 Comments Show -1 older comments Hide -1 older commentsAccepted Answer: Srivardhan Gadila. 3. pdist2 (X,Y,Distance): distance between each pair of observations in X and Y using the metric specified by Distance. 计算欧式距离并将距离矢量转换为矩阵. distance=pdist(pair, 'euclidean'); "distance" will give you the euclidean distance between the first and second coordinates. v=pdist3(a,sz,n,padwidth) Description. This function computes pairwise distance between two sample sets and produce a matrix of square of Euclidean or Mahalanobis distances. Answered: Muhammd on 14 Mar 2023. Using the MATLAB 'pdist' routine, the Euclidian distance between every pair of end-nodes was calculated, and the maximum value was taken as the dendritic diameter. This section is mostly for those of you who intend to develop and contribute code yourself (i. To get the distance between the I th and J th nodes (I > J), use the formula D ( (J-1)* (M-J/2)+I-J). The control. MATLAB's custom distance function example. MATLAB pdist函数可以根据不同的方法和参数，计算成对观测值之间的欧几里德距离、闵可夫斯基距离或其他距离。您可以使用示例、语法和说明了如何使用pdist函数进行计. The Mahalanobis distance from a vector y to a distribution with mean μ and covariance Σ is. Am lost please help. Thanks. txt format. Follow. Some Matlab code performing Correspondence Analysis and PCA on samples of data - matlab-pca-examples/CAH. example. Load and inspect the arrhythmia data set. Alternatively, a collection of (m) observation vectors in (n) dimensions may be passed as an (m) by (n) array. Matlab: 2D projection of a 3D function. Find more on Random Number Generation in Help Center and File Exchange. e. 列？. squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. . matlab code I can not use matlab function pdist pdist2 I need standard euclidean distance between two vectors. HC1992 on 6 Feb 2018. example. All elements of the condensed distance matrix must be finite, i. 0 votes. You only need to import the distance module. If you believe that you should have this licence, contact mathworks support. Use sdo. sum (any (isnan (imputedData1),2)) ans = 0. as arguments a 1-by-n vector XI, corresponding to a single row of X, and an m2-by-n matrix XJ, corresponding to multiple rows of X. Description. Learn more about distance, euclidean, pdist, coordinates, optimisation MATLAB Hi all, Many of the codes I am currently using depend on a simple calculation: the distance between a single point and a set of other points. Z = linkage(Y,'single') If 0 < c < 2, use cluster to define clusters from Z when inconsistent values are less than c. cityblockSimilarity. Computes the distance between m points using Euclidean distance (2-norm) as the distance metric between the points. 2444 169. Additional comment actions. 8 ). [D,I] = pdist2 ( ___) also returns the matrix I. Learn more about pdist2, error, stats MATLAB Every time I want to use pdist2, I get the following error: Undefined function 'pdist2mex' for input arguments of type 'double'. 1 altering a matrix in matlab. Rows of X and Y correspond to observations, That is, it works on the ROWS of the matrices. If you don't have that toolbox, you can also do it with basic operations. I am struggling a bit here, and hope somebody could help. The. v=pdist3(a,sz,n,padwidth) Description. 0. Link. sum())) If you want to use a regular function instead of a lambda function the equivalent would beI was told that by removing unnecessary for loops I can reduce the execution time. pdist (X): Euclidean distance between pairs of observations in X. function Distance = euclidean (x,y) % This function replaces the function pdist2 available only at the Machine. 0414 2. Matlab provides a knnsearch function that uses K-D-trees for this exact purpose. 0000 To make it easier to see the relationship between the distance information generated by pdistand the objects in the original data set, you can reformat the distance vector into a matrix using thesquareformfunction. How to separately compute the Euclidean Distance in different dimension? 1. I know about the prctile function, but it requires the Statistics Toolbox in Matlab which I do not have. For a dataset made up of m objects, there are pairs. Full size image. Development install. Having said that, note that MATLAB did restrict the dimensions of the second input array for a good reason (stated above). All elements of the condensed distance matrix must be finite, i. Related questions. The Euclidean distance between two vectors b. % Demo to demonstrate how pdist() can find distances between all points of 2 sets of points. To explore classification models interactively, use the Classification Learner app. Am I correct?This MATLAB function returns the Euclidean distance between pairs of observations in X. Add the %#codegen compiler directive (or pragma) to the entry. SciPy（scipy. 一、pdist 和 pdist2 是MATLAB中用于计算距离矩阵的两个不同函数，它们的区别在于输入和输出以及一些计算选项。选项：与pdist相比，pdist2可以使用不同的距离度量方式，还可以提供其他选项来自定义距离计算的行为。输出：距离矩阵是一个矩阵，其中每个元素表示第一组点中的一个点与第二组点中的. The output, Y, is a. Z = dist (W,P) takes an S -by- R weight matrix, W, and an R -by- Q matrix of Q input (column) vectors, P, and returns the S -by- Q matrix of vector distances, Z. 2. Learn more about matlab, pdist2, matrixCreate a hierarchical cluster tree using the 'average' method and the 'chebychev' metric. Solution: Pass the variables you want to use as input arguments to the function you use. Your third party file c: oolboxclassifypdist2. 9448. Therefore the similarity between all combinations is 1 - pdist (S1,'cosine') . I need to create a function that calculates the euclidean distance between two points A (x1,y1) and B (x2,y2) as d = sqrt ( (x2-x1)^2+ (y2-y1)^2)). distfun must accept a matrix XJ with an arbitrary number of rows. Z = linkage(X,method,pdist_inputs) passes pdist_inputs to the pdist function, which computes the distance between the rows of X. pdist is working fine and the stats toolbox is set in the path. Edited: MathWorks Support Team on 27 May 2020. Hi everyone. You can import vector and raster data from a wide range of file formats and web map servers. Explanation: pdist (S1,'cosine') calculates the cosine distance between all combinations of rows in S1. This example shows how to use cmdscale to perform classical (metric) multidimensional scaling, also known as principal coordinates analysis. Performance comparisons of Matlab pdist and GPU CUDA code computing the pairwise distance matrices of Spearman correlation coefficient. Specify a cell array if the distance metric requires extra arguments. This is the data i have:Y = pdist(X,'euclidean') Create an agglomerative hierarchical cluster tree from Y by using linkage with the 'single' method for computing the shortest distance between clusters. spatial. Any help. cartography distance euclidian geography map MATLAB pdist. ： D = 1 2 3 3. Pairwise distance between observations. how to find euclidean distance for an image MATLAB. 转载自CSDN——再次写给我们这些浮躁的程序员; matlab - 3 自由度的机械臂matlab里有没有可以直接计算任意两点之间距离的函数？ 如题，MATLAB里有没有可以直接计算一个数组（三维）里任意两点之间距离的函数？ 并且可以设定一个截断距离，输出距离小于截断距离的每一组点的坐标（或标号…Use dynamic time warping to align the signals such that the sum of the Euclidean distances between their points is smallest. . Pass Z to the squareform function to reproduce the output of the pdist function. example. The whole kicker is you can simply use the built in MATLAB functionpd = fitdist (x,distname,Name,Value) creates the probability distribution object with additional options specified by one or more name-value pair arguments. Genetic clustering and sequence analysis are used in bioinformatics. Fowzi barznji on 16 Mar 2020. My problem is pdist2 doesn't like that the column length is different. git push) and not just use 'irfu-matlab'. Find the treasures in MATLAB Central and discover how the community can help you! Start Hunting! Discover Live Editor. Create a clustergram object for Group 18 in the MATLAB workspace. ), and you can see that each histogram gives a different set of values. CosTheta = max (min (dot (u,v)/ (norm (u)*norm (v)),1),-1); ThetaInDegrees = real (acosd (CosTheta)); 5 Comments. The output of the pdist function is a condensed distance matrix. . Matlab Coding For Euclidean Distance This MATLAB function returns the Euclidean distance between pairs of observations in X For code generation pdist uses parfor MATLAB ® Coder? treats the I have a simple matlab code to generate Euclidean and Mahalanobis classifiers always return same Browse other questions tagged matlab euclidean distance. m at master · nmrshll/matlab-pca-examplesscipy. As you have mentioned that you are trying to solve NP-complete problem and need all the permutations, I suggest you write a small script which generates all the permutations by rearranging the elements in the array itself. You need to have the licence for the statistics toolbox to run pdist. cache가 "maximal"인 경우 pdist는 크기가 M×M인 전체 중간 행렬에 대해 충분한 메모리를 할당하려고. Conclusion. The first output is based on Haversine function, which is more accurate especially for longer distances. y = squareform (Z) squareform returns a symmetric matrix where Z (i,j) corresponds to the pairwise distance between observations i and j. Helllo I need help with standard euclidean distance knew would someone help with matlab code I can not use matlab function pdist pdist2 I need standard euclidean distance between two vectors. the results that you should get by using the pdist2 are as. Create a hierarchical cluster tree using the 'average' method and the 'chebychev' metric. Minkowski's distance equation can be found here. You can even include your own anonymous distance function in the call to. cluster. m is interfering with use of the pdist2 from the Statistics toolbox. So, do you know how to make the calcul inside the loop of. You can also specify a function for the distance metric using a function handle. One immediate difference between the two is that mahal subtracts the sample mean of X from each point in Y before computing distances. It will exceedingly ease you to see instruction Matlab Coding For Euclidean. It computes the distances between rows of X.